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dbiblast(1e)


NAME

   dbiblast - Index a BLAST database

SYNOPSIS

   dbiblast -dbname string -directory directory -filenames string
            -release string -date string -seqtype list -blastversion list
            -fields list -exclude string -sortoptions string
            -maxindex integer -systemsort boolean -cleanup boolean
            -sourcefile boolean -outfile outfile -indexoutdir outdir

   dbiblast -help

DESCRIPTION

   dbiblast is a command line program from EMBOSS ("the European Molecular
   Biology Open Software Suite"). It is part of the "Utils:Database
   indexing" command group(s).

OPTIONS

   Input section
   -dbname string

   -directory directory
       Default value: .

   -filenames string
       Default value: $(dbname)

   Required section
   -release string
       Default value: 0.0

   -date string
       Default value: 00/00/00

   -seqtype list
       Default value: unknown

   -blastversion list
       Default value: unknown

   Advanced section
   -fields list
       Default value: acc

   -exclude string

   -sortoptions string
       Sort options, typically '-T .' to use current directory for work
       files and '-k 1,1' to force GNU sort to use the first field Default
       value: -T . -k 1,1

   -maxindex integer

   -systemsort boolean
       Default value: Y

   -cleanup boolean
       Default value: Y

   -sourcefile boolean

   Output section
   -outfile outfile

   -indexoutdir outdir
       Default value: .

BUGS

   Bugs can be reported to the Debian Bug Tracking system
   (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
   (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

   dbiblast is fully documented via the tfm(1) system.

AUTHOR

   Debian Med Packaging Team
   <debian-med-packaging@lists.alioth.debian.org>
       Wrote the script used to autogenerate this manual page.

COPYRIGHT

   This manual page was autogenerated from an Ajax Control Definition of
   the EMBOSS package. It can be redistributed under the same terms as
   EMBOSS itself.



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