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fpars(1e)


NAME

   fpars - Discrete character parsimony

SYNOPSIS

   fpars -infile discretestates -intreefile tree [-weights properties]
         -method list [-maxtrees integer] -thorough toggle
         -rearrange boolean -njumble integer -seed integer
         [-outgrno integer] [-thresh toggle] -threshold float
         -outfile outfile [-trout toggle] -outtreefile outfile
         [-printdata boolean] [-progress boolean] [-treeprint boolean]
         [-stepbox boolean] [-ancseq boolean] -dotdiff boolean

   fpars -help

DESCRIPTION

   fpars is a command line program from EMBOSS ("the European Molecular
   Biology Open Software Suite"). It is part of the "Phylogeny:Discrete
   characters" command group(s).

OPTIONS

   Input section
   -infile discretestates
       File containing one or more data sets

   -intreefile tree

   -weights properties

   Additional section
   -method list
       Default value: Wagner

   -maxtrees integer
       Default value: 100

   -thorough toggle
       Default value: Y

   -rearrange boolean
       Default value: Y

   -njumble integer

   -seed integer
       Default value: 1

   -outgrno integer

   -thresh toggle
       Default value: N

   -threshold float
       Default value: 1

   Output section
   -outfile outfile

   -trout toggle
       Default value: Y

   -outtreefile outfile

   -printdata boolean
       Default value: N

   -progress boolean
       Default value: Y

   -treeprint boolean
       Default value: Y

   -stepbox boolean
       Default value: N

   -ancseq boolean
       Default value: N

   -dotdiff boolean
       Default value: Y

BUGS

   Bugs can be reported to the Debian Bug Tracking system
   (http://bugs.debian.org/emboss), or directly to the EMBOSS developers
   (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

   fpars is fully documented via the tfm(1) system.

AUTHOR

   Debian Med Packaging Team
   <debian-med-packaging@lists.alioth.debian.org>
       Wrote the script used to autogenerate this manual page.

COPYRIGHT

   This manual page was autogenerated from an Ajax Control Definition of
   the EMBOSS package. It can be redistributed under the same terms as
   EMBOSS itself.



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