mia-2dmyocard-segment(1)
NAME
mia-2dmyocard-segment - Work in progress
SYNOPSIS
mia-2dmyocard-segment -i <in-file> -o <out-file> [options]
DESCRIPTION
mia-2dmyocard-segment This program is work in progress
OPTIONS
File-IO
-i --in-file=(input, required); string
input perfusion data set
-o --out-file=(output, required); io
output myocardial mask For supported file types see
PLUGINS:2dimage/io
-f --save-features=(output); string
save ICA features to files with this name base
Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and
higher priorities. Supported priorities starting at
lowest level are:
info Low level messages
trace Function call trace
fail Report test failures
warning Warnings
error Report errors
debug Debug output
message Normal messages
fatal Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit
ICA
-C --components=0
ICA components 0 = automatic estimation testing 4 and
5ICA components 0 = automatic estimation testing 4 and 5
--normalize
normalized ICs
--no-meanstrip
don't strip the mean from the mixing curves
-k --skip=2
skip images at the beginning of the series as they are of
other modalitiesskip images at the beginning of the
series as they are of other modalities
-m --max-ica-iter=400
maximum number of iterations in ICAmaximum number of
iterations in ICA
Processing
--threads=-1
Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical
processor cores in the machine. (-1: automatic
estimation).Maxiumum number of threads to use for
processing,This number should be lower or equal to the
number of logical processor cores in the machine. (-1:
automatic estimation).
PLUGINS: 2dimage/io
bmp BMP 2D-image input/output support. The plug-in supports
reading and writing of binary images and 8-bit gray scale
images. read-only support is provided for 4-bit gray scale
images. The color table is ignored and the pixel values are
taken as literal gray scale values.
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
datapool Virtual IO to and from the internal data pool
Recognized file extensions: .@
dicom 2D image io for DICOM
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
exr a 2dimage io plugin for OpenEXR images
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
jpg a 2dimage io plugin for jpeg gray scale images
Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
Supported element types:
unsigned 8 bit
png a 2dimage io plugin for png images
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
raw RAW 2D-image output support
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
tif TIFF 2D-image input/output support
Recognized file extensions: .TIF, .TIFF, .tif, .tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned
32 bit
vista a 2dimage io plugin for vista images
Recognized file extensions: .-, .V, .VISTA, .v, .vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
EXAMPLE
Example mia-2dmyocard-segment Example
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 19992015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
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