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mia-2dsegshiftperslice(1)


NAME

   mia-2dsegshiftperslice - Translate a segmentation by the given amount.

SYNOPSIS

   mia-2dsegshiftperslice -i <in-file> -o <out-file> -S <shift> [options]

DESCRIPTION

   mia-2dsegshiftperslice  This  program  move  the  segmentation(s) of an
   image series by using a shift that is given on a  per-slice  base.  The
   program  can  be  used  to  correct the segmentation of the images if a
   linear registration was executed that only applies  a  translation  and
   does not correct the segmentation automatically.

OPTIONS

          -i --in-file=(input, required); string
                 input segmentation set

          -o --out-file=(output, required); string
                 output segmentation set

          -g --image-file=crop
                 output image filename base

          -S --shift=(required); string
                 shift of segmentation - base name

   Help & Info
          -V --verbose=warning
                 verbosity  of  output,  print messages of given level and
                 higher  priorities.  Supported  priorities  starting   at
                 lowest level are:
                    info  Low level messages
                    trace  Function call trace
                    fail  Report test failures
                    warning  Warnings
                    error  Report errors
                    debug  Debug output
                    message  Normal messages
                    fatal  Report only fatal errors

             --copyright
                 print copyright information

          -h --help
                 print this help

          -? --usage
                 print a short help

             --version
                 print the version number and exit

   Processing
             --threads=-1
                 Maxiumum  number  of  threads  to use for processing,This
                 number should be lower or equal to the number of  logical
                 processor   cores   in   the   machine.   (-1:  automatic
                 estimation).Maxiumum  number  of  threads  to   use   for
                 processing,This  number  should  be lower or equal to the
                 number of logical processor cores in  the  machine.  (-1:
                 automatic estimation).

EXAMPLE

   Shirt  the segmentation given in set segment.set by files shiftXXXX.txt
   and store the  result  in  shifted.set.  Note,  the  numbering  of  the
   shiftXXXX.txx files must coincide.

   mia-2dsegshiftperslice  -i  segment.set  -o  shifted.set  -g shifted -S
          shift

AUTHOR(s)

   Gert Wollny

COPYRIGHT

   This software is Copyright (c) 19992015 Leipzig, Germany  and  Madrid,
   Spain.   It  comes   with   ABSOLUTELY   NO  WARRANTY   and   you   may
   redistribute it under the terms  of  the  GNU  GENERAL  PUBLIC  LICENSE
   Version  3  (or  later).  For more information run the program with the
   option '--copyright'.



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