mia-3dimageaddattributes(1)
NAME
mia-3dimageaddattributes - Add attributes to the meta data of a 3D image.
SYNOPSIS
mia-3dimageaddattributes -i <in-file> -o <out-file> -a <attr> [options]
DESCRIPTION
mia-3dimageaddattributes This program appends all the meta-data attributes found in a 2D input image to a 3D image (if the output format supports such attributes). Attributes that are already present in the 3D image are not overwritten.
OPTIONS
-i --in-file=(input, required); io
input image(s) to be filtered For supported file types
see PLUGINS:3dimage/io
-o --out-file=(output, required); io
output image(s) with the added attributes For supported
file types see PLUGINS:3dimage/io
-a --attr=(input, required); io
2D image providing the attributes For supported file
types see PLUGINS:2dimage/io
Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and
higher priorities. Supported priorities starting at
lowest level are:
info Low level messages
trace Function call trace
fail Report test failures
warning Warnings
error Report errors
debug Debug output
message Normal messages
fatal Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit
Processing
--threads=-1
Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical
processor cores in the machine. (-1: automatic
estimation).Maxiumum number of threads to use for
processing,This number should be lower or equal to the
number of logical processor cores in the machine. (-1:
automatic estimation).
PLUGINS: 2dimage/io
bmp BMP 2D-image input/output support. The plug-in supports
reading and writing of binary images and 8-bit gray scale
images. read-only support is provided for 4-bit gray scale
images. The color table is ignored and the pixel values are
taken as literal gray scale values.
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
datapool Virtual IO to and from the internal data pool
Recognized file extensions: .@
dicom 2D image io for DICOM
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
exr a 2dimage io plugin for OpenEXR images
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
jpg a 2dimage io plugin for jpeg gray scale images
Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
Supported element types:
unsigned 8 bit
png a 2dimage io plugin for png images
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
raw RAW 2D-image output support
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
tif TIFF 2D-image input/output support
Recognized file extensions: .TIF, .TIFF, .tif, .tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned
32 bit
vista a 2dimage io plugin for vista images
Recognized file extensions: .-, .V, .VISTA, .v, .vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
PLUGINS: 3dimage/io
analyze Analyze 7.5 image
Recognized file extensions: .HDR, .hdr
Supported element types:
unsigned 8 bit, signed 16 bit, signed 32 bit, floating
point 32 bit, floating point 64 bit
datapool Virtual IO to and from the internal data pool
Recognized file extensions: .@
dicom Dicom image series as 3D
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
hdf5 HDF5 3D image IO
Recognized file extensions: .H5, .h5
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
signed 64 bit, unsigned 64 bit, floating point 32 bit,
floating point 64 bit
inria INRIA image
Recognized file extensions: .INR, .inr
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned
16 bit, signed 32 bit, unsigned 32 bit, floating point
32 bit, floating point 64 bit
mhd MetaIO 3D image IO using the VTK implementation
(experimental).
Recognized file extensions: .MHA, .MHD, .mha, .mhd
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned
16 bit, signed 32 bit, unsigned 32 bit, floating point
32 bit, floating point 64 bit
nifti NIFTI-1 3D image IO. The orientation is transformed in the
same way like it is done with 'dicomtonifti --no-reorder'
from the vtk-dicom package.
Recognized file extensions: .NII, .nii
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned
16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit,
unsigned 64 bit, floating point 32 bit, floating point
64 bit
vff VFF Sun raster format
Recognized file extensions: .VFF, .vff
Supported element types:
unsigned 8 bit, signed 16 bit
vista Vista 3D
Recognized file extensions: .-, .V, .VISTA, .v, .vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
vti 3D image VTK-XML in- and output (experimental).
Recognized file extensions: .VTI, .vti
Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned
16 bit, signed 32 bit, unsigned 32 bit, floating point
32 bit, floating point 64 bit
vtk 3D VTK image legacy in- and output (experimental).
Recognized file extensions: .VTK, .VTKIMAGE, .vtk,
.vtkimage
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16
bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit,
floating point 32 bit, floating point 64 bit
EXAMPLE
Append the attributes found in 2d.v to 3d.v and store the result in attr3d.v mia-3dimageaddattributes -i 3d.v -o attr3d.v -a 2d.v
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 19992015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
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