mia-3disosurface-from-stack(1)
NAME
mia-3disosurface-from-stack - Extract an ist-surface froma a 3D image.
SYNOPSIS
mia-3disosurface-from-stack -i <in-image> -o <out-mesh> [options]
DESCRIPTION
mia-3disosurface-from-stack This program is used to extract an iso- surface from the input gray scale image given as slices.
OPTIONS
File-IO
-i --in-image=(input, required); string
input image filename pattern
-o --out-mesh=(output, required); string
output mesh
Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and
higher priorities. Supported priorities starting at
lowest level are:
info Low level messages
trace Function call trace
fail Report test failures
warning Warnings
error Report errors
debug Debug output
message Normal messages
fatal Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit
Image options
-s --iso-value=128
iso-value of iso surface to be extractediso-value of iso
surface to be extracted
Mesh options
-f --max-faces=-1
maximum number of Faces,maximum number of Faces,
-e --max-edges=-1
maximum number of Edgesmaximum number of Edges
-c --max-cost=0.1
maximum cost for edge collapsmaximum cost for edge
collaps
-r --ratio=4
ratio of faces(edges) to target number, at which the
optimization changes from edge-length to
volume-optimizedratio of faces(edges) to target number,
at which the optimization changes from edge-length to
volume-optimized
-w --reverse-winding
reverse the winding of the triangles in order to make
normals point away from the high intensity area
Processing
--threads=-1
Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical
processor cores in the machine. (-1: automatic
estimation).Maxiumum number of threads to use for
processing,This number should be lower or equal to the
number of logical processor cores in the machine. (-1:
automatic estimation).
EXAMPLE
Extract the surface from an image set with numbers imageXXXX.png that
corresponds to the value 30 and stop optimizing when the mesh consists
of less than 100000 triangles.
mia-3disosurface-from-stack -i image0000.png -o mesh.vmesh -s 30 -f
100000
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 19992015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
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