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travis(1)


NAME

   travis - Trajectory Analyzer and Visualizer

SYNOPSIS

   travis [options] [file]

DESCRIPTION

   travis  is  a  Trajectory Analyzer and Visualizer (TRAVIS), a free tool
   for analyzing and visualizing trajectories from all kinds of  Molecular
   Dynamics or Monte Carlo simulations. The aim of TRAVIS is to collect as
   many analyses as possible in one program, creating a powerful tool  and
   making  it  unnecessary  to  use many different programs for evaluating
   simulations. This should greatly rationalize and simplify the  workflow
   of analyzing trajectories.

OPTIONS

   If  only  one parameter is specified, it is assumed to be the name of a
   trajectory file.

   The program supports the following options:

   -p file
          Loads position data from the  specified  trajectory  file.   The
          file  format  may  be  XYZ  (.xyz), PDB (.pdb), LAMMPS (.lmp) or
          DLPOLY (file name HISTORY without an extension). If this  option
          is not set, the trajectory file to open will be asked for.

   -i file
          Reads input from the specified text file.

   -stream
          Treats input trajectory as a stream (e.g. named pipe)

   -config file
          Load the specified configuration file.

   -showconf
          Shows a tree structure of the configuration file.

   -writeconf
          Writes the default configuration file.

   -nocolor
          Execute in monochrome mode.

   -dimcolor
          Uses dim instead of bright colors.

   -verbose
          Show detailed information about what's going on.

   -help, -?
          Show help screen.

FILES

   travis.log, #1#travis.log, #2#travis.log, ...
          Session log file(s).

   travis.conf, ~/travis.conf
          Configuration file(s).

BUGS

   Never  do run more than one instance of TRAVIS in the same directory at
   the same time as every instance will try to access the  same  log  file
   and at least one of it will crash.

CITATION

   Please cite TRAVIS as follows:

          M.  Brehm  and  B.  Kirchner:  "TRAVIS  -  A  free  Analyzer and
          Visualizer for Monte Carlo and Molecular Dynamics Trajectories",
          J.   Chem.   Inf.   Model.,   2011,  51(8),  pp  2007-2023,  DOI
          10.1021/ci200217w.

AUTHORS

   This manual page was written by  Daniel  Leidert  <dleidert@debian.org>
   for the Debian GNU/Linux system (but may be used by others).



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